PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G049800.1
Common NameB456_001G049800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 177aa    MW: 19863.9 Da    PI: 5.7936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G049800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-191364156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa  +++ge
  Gorai.001G049800.1 13 CKYRGVRMRS-WGKWVSEIREPKK---NSRIWLGTFPTAEMAARAHDAASIAIKGE 64
                        79*****998.**********976...4*********************9988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-131364IPR001471AP2/ERF domain
CDDcd000185.80E-321371No hitNo description
Gene3DG3DSA:3.30.730.101.8E-311472IPR001471AP2/ERF domain
PROSITE profilePS5103222.9061471IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-211471IPR016177DNA-binding domain
SMARTSM003806.0E-361477IPR001471AP2/ERF domain
PRINTSPR003675.3E-111526IPR001471AP2/ERF domain
PRINTSPR003675.3E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKPNASNNHE KSCKYRGVRM RSWGKWVSEI REPKKNSRIW LGTFPTAEMA ARAHDAASIA  60
IKGESAYLNF PKLAHQLPRP ATCSHRDIQK AANEAAHGNG NGNGMVGEEE EERFEGEAAS  120
STTMSSEDSD LSMWFDLPDL SLEPDGTHHR FGFNSWWQHE QAGIHTDFQF EETIME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-171171263ATERF1
2gcc_A3e-171171263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165730.0JX616573.1 Gossypium hirsutum clone NBRI_GE61335 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466702.11e-131PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-45ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D2PLZ11e-131A0A0D2PLZ1_G
STRINGAT2G44940.13e-43(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-34ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]